And B5R, can be used to segregate Brazilian VACV into

And B5R, can be used to segregate Brazilian VACV into Group 1 or 2 (Figure 6A). All sequences obtained in this study were deposited in GenBank: JX678770, JX678771, JX678772, JX678773, JX678774, JX678775, JX678776, JX678777, JX678778, JX678779, JX678780, JX678781 and JX678782. In some Orthopoxvirus species C23L encodes for a soluble chemokine-binding viral protein that influences virulence in vivo, because C23L knockout Rabbitpox virus-infected animals had an increased influx of extravasating leukocytes in the deep dermis during the early phases of infection [30]. By binding certain host chemokines with high affinity, C23L blocks the chemokine interactions with their cellular receptors, abolishing cell transduction pathways and, consequently, inhibiting the chemokine biological activities. Analyses of genomic databases indicate that VACV-WR and others VACV strains may present an upstream start-codon, which would reflect in a distinct coding-frame (unpublish data); as we compared VACV-BR with the prototype VACV-WR and others, our data indicated that VACV-BR Group 1 isolates are not able to produce whole C23L protein, as VACVWR and VACV-BR Group 2 isolates. However, we believe that new studies are necessary to reveal C23L expression profile and possible alternative transcription frames. There is no analog to C23L in OPV hosts, so it is unlikely that C23L has been acquired by horizontal transfer [30,31,32]. Even though there is no supporting biological data concerning C23L importance to Brazilian VACV virulence, we can speculate that loss of function due to a premature stop-codon in the C23L open reading frame of Group 1 Brazilian 24272870 VACV isolates may be a factor that contributes to decreased virulence of this group. The ten-nucleotide Title Loaded From File deletion in C23L can also serve as a marker for non-virulent Brazilian VACV viruses and may be used to characterize new isolates or exploited in differential PCR-based screening with primers that either bind to the deleted sequence or not (Kroon, unpublished data). C23L has already been incorporated into diagnostic assays; oligonucleotide probes designed to detect the C23L sequence have been included in the microarrays for OPV detection [33,34]. C23L has also been used successfully for OPV phylogenetic analysis, dividing twelve European CPXV isolates into two major clades and up to five distinct monophyletic clusters [35].C23L Gene as a Brazilian A-196 site Vaccinia virus MarkerC23L Gene as a Brazilian Vaccinia virus MarkerFigure 6. Phylogenetic analysis and sequence alignments of C23L coding sequences. (A) Phylogenetic analysis of C23Lsequences show the grouping of the Brazilian VACV strains into two different branches (Groups 1 and 2), which do not cluster directly with the vaccine strains (vaccine strains: those with no asterisk; and VACV-WR, a laboratorial strain). The DMTV-2005 isolate was clustered with Group 1 as observed with A56R and B5R analyses. (B) Amino acid sequence alignments of the C23L. The stop-codon at position 173 is generated by a ten-nucleotide deletion and highlighted with an arrow. This genetic marker is shared by the DMTV-2005 isolate and other Brazilian VACV strains, such as MARV and GP2V (Group 1), whereas the ten-nucleotide deletion is absenting the GP1V, VBH and P1V strains (Group 2). doi:10.1371/journal.pone.0050413.gWe conclude that DMTV-2005 is a new Group 1 Brazilian VACV strain (non-mice virulent) that was isolated from an outbreak of bovine vaccinia in the southeast region of Brazil. Far.And B5R, can be used to segregate Brazilian VACV into Group 1 or 2 (Figure 6A). All sequences obtained in this study were deposited in GenBank: JX678770, JX678771, JX678772, JX678773, JX678774, JX678775, JX678776, JX678777, JX678778, JX678779, JX678780, JX678781 and JX678782. In some Orthopoxvirus species C23L encodes for a soluble chemokine-binding viral protein that influences virulence in vivo, because C23L knockout Rabbitpox virus-infected animals had an increased influx of extravasating leukocytes in the deep dermis during the early phases of infection [30]. By binding certain host chemokines with high affinity, C23L blocks the chemokine interactions with their cellular receptors, abolishing cell transduction pathways and, consequently, inhibiting the chemokine biological activities. Analyses of genomic databases indicate that VACV-WR and others VACV strains may present an upstream start-codon, which would reflect in a distinct coding-frame (unpublish data); as we compared VACV-BR with the prototype VACV-WR and others, our data indicated that VACV-BR Group 1 isolates are not able to produce whole C23L protein, as VACVWR and VACV-BR Group 2 isolates. However, we believe that new studies are necessary to reveal C23L expression profile and possible alternative transcription frames. There is no analog to C23L in OPV hosts, so it is unlikely that C23L has been acquired by horizontal transfer [30,31,32]. Even though there is no supporting biological data concerning C23L importance to Brazilian VACV virulence, we can speculate that loss of function due to a premature stop-codon in the C23L open reading frame of Group 1 Brazilian 24272870 VACV isolates may be a factor that contributes to decreased virulence of this group. The ten-nucleotide deletion in C23L can also serve as a marker for non-virulent Brazilian VACV viruses and may be used to characterize new isolates or exploited in differential PCR-based screening with primers that either bind to the deleted sequence or not (Kroon, unpublished data). C23L has already been incorporated into diagnostic assays; oligonucleotide probes designed to detect the C23L sequence have been included in the microarrays for OPV detection [33,34]. C23L has also been used successfully for OPV phylogenetic analysis, dividing twelve European CPXV isolates into two major clades and up to five distinct monophyletic clusters [35].C23L Gene as a Brazilian Vaccinia virus MarkerC23L Gene as a Brazilian Vaccinia virus MarkerFigure 6. Phylogenetic analysis and sequence alignments of C23L coding sequences. (A) Phylogenetic analysis of C23Lsequences show the grouping of the Brazilian VACV strains into two different branches (Groups 1 and 2), which do not cluster directly with the vaccine strains (vaccine strains: those with no asterisk; and VACV-WR, a laboratorial strain). The DMTV-2005 isolate was clustered with Group 1 as observed with A56R and B5R analyses. (B) Amino acid sequence alignments of the C23L. The stop-codon at position 173 is generated by a ten-nucleotide deletion and highlighted with an arrow. This genetic marker is shared by the DMTV-2005 isolate and other Brazilian VACV strains, such as MARV and GP2V (Group 1), whereas the ten-nucleotide deletion is absenting the GP1V, VBH and P1V strains (Group 2). doi:10.1371/journal.pone.0050413.gWe conclude that DMTV-2005 is a new Group 1 Brazilian VACV strain (non-mice virulent) that was isolated from an outbreak of bovine vaccinia in the southeast region of Brazil. Far.